ColBuilder
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Generate collagen models
Organism:
Homo sapiens
Ailuropoda melanoleuca
Bos taurus
Callithrix jacchus
Canis lupus
Danio rerio
Gasterosteus aculeatus
Loxodonta africana
Mus musculus
Mustela putorius
Myotis lucifugus
Oreochromis niloticus
Oryzias latipes
Otolemur garnettii
Pan troglodytes
Pelodiscus sinensis
Pongo abelii
Rattus norvegicus
Tetraodon nigroviridis
Xiphophorus maculatus
N-terminal crosslink type
None
HLKNL
LKNL
deHHLNL
deHLNL
PYD
DPD
PYL
DPL
C-terminal crosslink type
None
HLKNL
LKNL
deHHLNL
deHLNL
PYD
DPD
PYL
DPL
Download Fibril Fragment (PDB)
Fibril fragment comprising 41 triple helices spanning one central overlap and one gap region (in two parts, left and right).
Download Collagen molecule (PDB)
including symmetry information in the HEADER to rebuild the whole fibril.
Download FF Parameters for Gromacs
Fibril fragment comprising 41 triple helices spanning one central overlap and one gap region (in two parts, left and right)
Citation:
ColBuilder: A server to build collagen fibril models. Agnieszka Obarska-Kosinska, Benedikt Rennekamp, Aysecan Ünal and Frauke Gräter (Biophys. J., 2021)
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